File List

Here is a list of all files with brief descriptions:

[detail level 123456789]

▼ build-dev-doc
▼ stage
▼ include
▼ ost
► bindings
wrap_tmalign.hh
► conop
amino_acids.hh
compound.hh
compound_lib.hh
compound_lib_base.hh
conop.hh
diag.hh
heuristic.hh
minimal_compound_lib.hh
model_check.hh
module_config.hh
processor.hh
ring_finder.hh
rule_based.hh
► db
binary_container.hh
extract_data_helper.hh
linear_indexer.hh
module_config.hh
sqlite_conv.hh
sqlite_wrap.hh
► export_helper
generic_property_def.hh
pair_to_tuple_conv.hh
vec_to_list_conv.hh
► geom
► export_helper
vector.hh
aligned_cuboid.hh
circular_iterator.hh
composite.hh
composite2.hh
composite2_op.hh
composite3.hh
composite3_op.hh
composite_op.hh
constants.hh
def.hh
exc.hh
geom.hh
mat.hh
mat2.hh
mat3.hh
mat4.hh
module_config.hh
point_cloud.hh
quat.hh
transform.hh
vec.hh
vec2.hh
vec3.hh
vec4.hh
vec_mat_predicates.hh
vecmat2_op.hh
vecmat3_op.hh
vecmat4_op.hh
vecmat_op.hh
► gfx
► color_ops
basic_gradient_color_op.hh
by_chain_color_op.hh
by_element_color_op.hh
color_op.hh
entity_view_color_op.hh
gradient_color_op.hh
gradient_level_color_op.hh
map_handle_color_op.hh
uniform_color_op.hh
► impl
backbone_trace.hh
cartoon_renderer.hh
connect_renderer_base.hh
cpk_renderer.hh
custom_renderer.hh
debug_renderer.hh
entity_detail.hh
entity_renderer.hh
entity_renderer_fw.hh
fast_spheres.hh
line_trace_renderer.hh
map_iso_gen.hh
map_iso_gen_s.hh
map_iso_spec.hh
map_octree.hh
mapped_property.hh
octree_isocont.hh
scene_fx.hh
simple_renderer.hh
sline_renderer.hh
tabulated_trig.hh
trace_renderer.hh
trace_renderer_base.hh
► render_options
cartoon_render_options.hh
cpk_render_options.hh
custom_render_options.hh
line_render_options.hh
line_trace_render_options.hh
render_options.hh
simple_render_options.hh
sline_render_options.hh
trace_render_options.hh
bitmap_io.hh
collada_exporter.hh
color.hh
entity.hh
entity_fw.hh
exporter.hh
exporter_fw.hh
gfx.hh
gfx_fw.hh
gfx_node.hh
gfx_node_fw.hh
gfx_node_visitor.hh
gfx_object.hh
gfx_object_base.hh
gfx_object_fw.hh
gfx_prim.hh
gfx_test_object.hh
gl_helper.hh
gl_include.hh
glext_include.hh
glwin_base.hh
gost_exporter.hh
gradient.hh
gradient_manager.hh
input.hh
map_handle_color_op.hh
map_iso.hh
map_iso_prop.hh
map_slab.hh
material.hh
module_config.hh
povray.hh
povray_fw.hh
prim_list.hh
primitives.hh
render_mode.hh
render_pass.hh
scene.hh
scene_observer.hh
selection.hh
shader.hh
surface.hh
symmetry_node.hh
texture.hh
vertex_array.hh
vertex_array_helper.hh
► gui
► data_viewer
argand.hh
data_viewer.hh
data_viewer_panel.hh
data_viewer_panel_base.hh
draw_overlay.hh
drawing_functions.hh
fft_panel.hh
img2qt.hh
info_panel.hh
mask_overlay.hh
null_overlay.hh
overlay.hh
overlay_base.hh
overlay_base_fw.hh
overlay_manager.hh
overlay_manager_fw.hh
overlay_manager_gui.hh
overlay_manager_observer.hh
pointlist_overlay.hh
pointlist_overlay_base.hh
strategies.hh
strategies_fw.hh
viewer_normalizer.hh
► messages
log_reader.hh
message_box_widget.hh
message_widget.hh
► panels
bottom_bar.hh
button_bar.hh
button_box.hh
drop_box.hh
event_button.hh
panel_bar.hh
panel_bar_widget_holder.hh
panel_manager.hh
panel_widget_container.hh
side_bar.hh
splitter_panel_bar.hh
tabbed_panel_bar.hh
► python_shell
completer_base.hh
dir_model.hh
gutter.hh
main_thread_runner.hh
output_redirector.hh
path_completer.hh
python_completer.hh
python_context_parser.hh
python_interpreter.hh
python_interpreter_worker.hh
python_shell.hh
python_shell_fw.hh
python_shell_text_document_layout.hh
python_shell_widget.hh
python_syntax_highlighter.hh
python_tokenizer.hh
shell_history.hh
state.hh
state_machine.hh
text_logger.hh
transition.hh
transition_guard.hh
► scene_win
context_menu.hh
current_selection_node.hh
custom_part_node.hh
entity_node.hh
entity_part_node.hh
gfx_scene_node.hh
label_node.hh
render_mode_node.hh
render_modes_node.hh
root_node.hh
scene_node.hh
scene_win.hh
scene_win_model.hh
► sequence_viewer
align_properties_painter.hh
alignment_view_object.hh
background_painter.hh
base_row.hh
base_view_object.hh
conservation_painter.hh
painter.hh
secstr_row.hh
seq_secstr_painter.hh
seq_selection_painter.hh
seq_text_painter.hh
sequence_delegate.hh
sequence_model.hh
sequence_row.hh
sequence_search_bar.hh
sequence_table_view.hh
sequence_view_object.hh
sequence_viewer.hh
tick_painter.hh
title_row.hh
► tools
manipulator.hh
map_tool.hh
measure_tool.hh
mouse_event.hh
selection_tool.hh
tool.hh
tool_bar.hh
tool_manager.hh
tool_option.hh
tool_option_group.hh
tool_options.hh
tool_options_widget.hh
tool_options_win.hh
admin.hh
dock_widget.hh
file_browser.hh
file_loader.hh
file_type_dialog.hh
file_viewer.hh
gl_canvas.hh
gl_win.hh
gosty_app.hh
main.hh
main_area.hh
main_window.hh
module_config.hh
perspective.hh
scene_menu.hh
scene_selection.hh
thin_splitter.hh
widget.hh
widget_geom_handler.hh
widget_pool.hh
widget_registry.hh
widget_state_saver.hh
► img
► alg
alg_mirror.hh
alg_shift.hh
alg_transform.hh
anisotropic.hh
auto_correlate.hh
clear.hh
clip_min_max.hh
conjugate.hh
convolute.hh
correlate.hh
cross_correlate.hh
density_slice.hh
dft.hh
discrete_shrink.hh
fft.hh
fftw_helper.hh
fill.hh
filter.hh
fourier_filters.hh
fractional_shift.hh
gaussian.hh
gaussian_gradient_magnitude.hh
gaussian_laplacian.hh
highest_peak_search_3d.hh
histogram.hh
line_average.hh
line_iterator.hh
local_sigma_threshold.hh
mask_image.hh
module_config.hh
negate.hh
norm.hh
norm_linear.hh
norm_log.hh
norm_od.hh
normalizer.hh
normalizer_factory.hh
polar.hh
power_spectrum.hh
randomize.hh
rscrosscorr.hh
smooth_mask_image.hh
stat.hh
stat_accumulator.hh
stat_min_max.hh
threshold.hh
transcendentals.hh
transform.hh
transform_fw.hh
transformation_base.hh
transformations.hh
► image_state
dispatch.hh
image_state.hh
image_state_algorithm.hh
image_state_base.hh
image_state_base_fw.hh
image_state_def.hh
image_state_factory.hh
image_state_frequency_domain.hh
image_state_fw.hh
image_state_half_frequency_domain.hh
image_state_impl.hh
image_state_spatial_domain.hh
image_state_visitor.hh
image_state_visitor_fw.hh
index.hh
type_fw.hh
value_holder.hh
► raster_image
raster_image.hh
algorithm.hh
circle_mask.hh
composite_mask.hh
data.hh
data_algorithm.hh
data_observer.hh
data_types.hh
debug.hh
dllexport.hh
extent.hh
extent_iterator.hh
extent_mask.hh
image.hh
image_factory.hh
image_fw.hh
image_handle.hh
image_handle_fw.hh
image_impl.hh
image_list.hh
image_state.hh
image_state_fw.hh
inverted_mask.hh
map.hh
mask.hh
mask_base.hh
mask_base_fw.hh
mask_info_convert.hh
mask_op.hh
mask_visitor.hh
module_config.hh
normalizer_fw.hh
normalizer_impl.hh
null_data.hh
observable.hh
paste_impl.hh
peak.hh
phase.hh
physical_units.hh
pixel_sampling.hh
point.hh
point_list.hh
polygon_mask.hh
progress.hh
size.hh
spherical_mask.hh
util.hh
value_util.hh
vecmat.hh
► info
geom_info_conversion.hh
info.hh
info_error.hh
info_fw.hh
info_group.hh
info_handle.hh
info_impl.hh
info_impl_fw.hh
info_item.hh
info_path.hh
info_set.hh
info_verbose_visitor.hh
info_visitor.hh
item_type.hh
item_type_cast.hh
module_config.hh
► io
► img
image_format.hh
jpk_util.hh
load_map.hh
map_io_dat_handler.hh
map_io_df3_handler.hh
map_io_dm3_handler.hh
map_io_dx_handler.hh
map_io_handler.hh
map_io_ipl_handler.hh
map_io_jpk_handler.hh
map_io_mrc_handler.hh
map_io_nanoscope_handler.hh
map_io_png_handler.hh
map_io_situs_handler.hh
map_io_spi_handler.hh
map_io_tiff_handler.hh
tiff_util.hh
► mol
chemdict_parser.hh
dcd_io.hh
entity_io_crd_handler.hh
entity_io_handler.hh
entity_io_mae_handler.hh
entity_io_mmcif_handler.hh
entity_io_pdb_handler.hh
entity_io_pqr_handler.hh
entity_io_sdf_handler.hh
io_profile.hh
load_entity.hh
load_surface.hh
mmcif_info.hh
mmcif_reader.hh
mmcif_str.hh
mmcif_writer.hh
omf.hh
pdb_reader.hh
pdb_str.hh
pdb_writer.hh
save_entity.hh
sdf_reader.hh
sdf_str.hh
sdf_writer.hh
star_parser.hh
star_writer.hh
stereochemical_params_reader.hh
surface_io_handler.hh
surface_io_msms_handler.hh
► seq
clustal_io_handler.hh
fasta_io_handler.hh
hhm_io_handler.hh
load.hh
pir_io_handler.hh
profile_io_handler.hh
promod_io_handler.hh
pssm_io_handler.hh
save.hh
sequence_io_handler.hh
binary_data_sink.hh
binary_data_source.hh
chemdict_parser.hh
clustal_io_handler.hh
container_serialization.hh
convert.hh
converting_streams.hh
dcd_io.hh
entity_io_crd_handler.hh
entity_io_handler.hh
entity_io_mae_handler.hh
entity_io_mmcif_handler.hh
entity_io_pdb_handler.hh
entity_io_pqr_handler.hh
entity_io_sdf_handler.hh
fasta_io_handler.hh
formatted_line.hh
hhm_io_handler.hh
image_format.hh
io_exception.hh
io_manager.hh
io_profile.hh
io_utils.hh
jpk_util.hh
load.hh
load_entity.hh
load_map.hh
load_surface.hh
map_io_dat_handler.hh
map_io_df3_handler.hh
map_io_dm3_handler.hh
map_io_dx_handler.hh
map_io_handler.hh
map_io_ipl_handler.hh
map_io_jpk_handler.hh
map_io_mrc_handler.hh
map_io_nanoscope_handler.hh
map_io_png_handler.hh
map_io_situs_handler.hh
map_io_spi_handler.hh
map_io_tiff_handler.hh
mmcif_info.hh
mmcif_reader.hh
mmcif_str.hh
mmcif_writer.hh
module_config.hh
omf.hh
pdb_reader.hh
pdb_str.hh
pdb_writer.hh
pir_io_handler.hh
profile_io_handler.hh
promod_io_handler.hh
pssm_io_handler.hh
save.hh
save_entity.hh
sdf_reader.hh
sdf_str.hh
sdf_writer.hh
sequence_io_handler.hh
star_parser.hh
star_writer.hh
stereochemical_params_reader.hh
surface_io_handler.hh
surface_io_msms_handler.hh
swap_util.hh
tiff_util.hh
► mol
► alg
accessibility.hh
adjacency_bitmap.hh
biounit.hh
clash_score.hh
consistency_checks.hh
construct_cbeta.hh
contact_overlap.hh
distance_rmsd_test.hh
distance_test_common.hh
domain_find.hh
entity_to_density.hh
filter_clashes.hh
find_membrane.hh
gdt.hh
local_dist_diff_test.hh
module_config.hh
molck.hh
nonstandard.hh
pdbize.hh
sec_struct.hh
sec_structure_segments.hh
similarity_matrix.hh
structure_analysis.hh
superpose_frames.hh
svd_superpose.hh
trajectory_analysis.hh
► impl
atom_group.hh
atom_impl.hh
atom_impl_fw.hh
atom_prop.hh
chain_impl.hh
chain_impl_fw.hh
connector_impl.hh
connector_impl_fw.hh
dihedral.hh
entity_impl.hh
entity_impl_fw.hh
fragment_impl.hh
fragment_impl_fw.hh
pointer_iterator.hh
query_ast.hh
query_ast_fw.hh
query_impl.hh
query_impl_fw.hh
residue_impl.hh
residue_impl_fw.hh
surface_impl.hh
surface_impl_fw.hh
torsion_impl.hh
torsion_impl_fw.hh
► mm
block_modifiers.hh
buildingblock.hh
ff_reader.hh
forcefield.hh
gromacs_block_modifiers.hh
heuristic_block_modifiers.hh
index.hh
interaction.hh
modeller.hh
observer.hh
settings.hh
simulation.hh
state_extractor.hh
steep.hh
system_creator.hh
topology.hh
topology_creator.hh
atom_base.hh
atom_handle.hh
atom_view.hh
bond_handle.hh
bond_table.hh
bounding_box.hh
builder.hh
chain_base.hh
chain_handle.hh
chain_type.hh
chain_view.hh
chem_class.hh
chem_type.hh
coord_frame.hh
coord_group.hh
coord_source.hh
editor_base.hh
editor_type_fw.hh
entity_base.hh
entity_handle.hh
entity_observer.hh
entity_observer_fw.hh
entity_property_mapper.hh
entity_view.hh
entity_visitor.hh
entity_visitor_fw.hh
handle_type_fw.hh
ics_editor.hh
in_mem_coord_source.hh
module_config.hh
mol.hh
not_connected_error.hh
property_id.hh
query.hh
query_error.hh
query_state.hh
query_view_wrapper.hh
residue_base.hh
residue_handle.hh
residue_prop.hh
residue_view.hh
sec_structure.hh
spatial_organizer.hh
surface.hh
surface_builder.hh
surface_handle.hh
surface_prop.hh
torsion_handle.hh
transfer_connectivity.hh
transform.hh
view_op.hh
view_type_fw.hh
xcs_editor.hh
► seq
► alg
alignment_opts.hh
clip_alignment.hh
conservation.hh
contact_prediction_score.hh
contact_weight_matrix.hh
default_contact_weight_matrix.hh
default_pair_subst_weight_matrix.hh
distance_map.hh
entropy.hh
global_align.hh
hmm_pseudo_counts.hh
hmm_score.hh
ins_del.hh
local_align.hh
merge_pairwise_alignments.hh
module_config.hh
pair_subst_weight_matrix.hh
semiglobal_align.hh
sequence_identity.hh
sequence_similarity.hh
subst_weight_matrix.hh
variance_map.hh
► impl
sequence_impl.hh
sequence_impl_fw.hh
sequence_list_impl.hh
sequence_list_impl_fw.hh
sequence_list_iterator.hh
aligned_column.hh
aligned_column_iterator.hh
aligned_region.hh
alignment_handle.hh
invalid_sequence.hh
module_config.hh
profile_handle.hh
sequence_handle.hh
sequence_list.hh
sequence_op.hh
views_from_sequences.hh
► test_utils
compare_files.hh
base.hh
boost_filesystem_helper.hh
config.hh
dllexport.hh
dyn_cast.hh
fixed_string.hh
generic_property.hh
integrity_error.hh
invalid_handle.hh
log.hh
log_sink.hh
message.hh
module_config.hh
paged_array.hh
platform.hh
pod_vector.hh
profile.hh
ptr_observer.hh
range.hh
stdint.hh
stdint_msc.hh
string_ref.hh
tri_matrix.hh
units.hh
version.hh
▼ lib64
▼ python3.9
► site-packages
► ost
► bindings
__init__.py
blast.py
cadscore.py
clustalw.py
dockq.py
dssp.py
hbplus.py
hhblits.py
hhblits2.py
hhblits3.py
ialign.py
kclust.py
lga.py
mmseqs2.py
msms.py
naccess.py
tmtools.py
utils.py
► conop
__init__.py
cleanup.py
► db
__init__.py
► geom
__init__.py
► gfx
__init__.py
py_gfx_obj.py
► gui
► dng
__init__.py
init.py
menu.py
superpositiondialog.py
termuse.py
► scene
__init__.py
color_options_widget.py
color_select_widget.py
combo_options_widget.py
cpk_widget.py
custom_widget.py
gradient_editor_widget.py
gradient_info_handler.py
gradient_list_model.py
gradient_preset_widget.py
hsc_widget.py
immutable_gradient_info_handler.py
immutable_preset_info_handler.py
init_inspector.py
inspector_widget.py
line_trace_widget.py
map_level_widget.py
preset.py
preset_editor_list_model.py
preset_editor_widget.py
preset_info_handler.py
preset_list_model.py
preset_widget.py
query_editor.py
remote.py
render_mode_widget.py
render_op.py
render_options_widget.py
scene_observer_impl.py
scene_selection_helper.py
simple_widget.py
sline_widget.py
toolbar_options_widget.py
trace_widget.py
tube_widget.py
uniform_color_widget.py
visibility_op.py
wireframe_widget.py
__init__.py
gosty_startup.py
helpwidget.py
init_context_menu.py
init_menubar.py
init_spacenav.py
init_splash.py
table.py
trajectory_viewer.py
► img
► alg
__init__.py
__init__.py
► info
__init__.py
► io
__init__.py
remote.py
repository.py
► mol
► alg
__init__.py
chain_mapping.py
contact_score.py
dockq.py
hbond.py
helix_kinks.py
lddt.py
ligand_scoring.py
qsscore.py
qsscoring.py
scoring.py
stereochemistry.py
structure_analysis.py
superpose.py
trajectory_analysis.py
views.py
► mm
__init__.py
antechamber.py
__init__.py
► seq
► alg
__init__.py
aaindex.py
mat.py
renumber.py
__init__.py
__init__.py
dng_startup.py
ost_startup.py
settings.py
stutil.py
table.py
table_selector.py
testutils.py
xmlrunner.py
▼ modules
▼ base
doc
▼ config
base.hh
config.hh
dllexport.hh
version.hh
▼ conop
doc
▼ gfx
doc
▼ io
doc
▼ mol
▼ base
doc
▼ seq
▼ base
doc