hmm_pseudo_counts.hh File Reference

#include <ost/seq/profile_handle.hh>

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Data Structures
class	ContextProfile
class	ContextProfileDB

Namespaces
	ost
	ost::seq
	ost::seq::alg

Typedefs
typedef boost::shared_ptr< ContextProfileDB >	ContextProfileDBPtr

Functions
void	AddTransitionPseudoCounts (ost::seq::ProfileHandle &profile, Real gapb=1.0, Real gabd=0.15, Real gape=1.0)
void	AddAAPseudoCounts (ost::seq::ProfileHandle &profile, Real a=1.0, Real b=1.5, Real c=1.0)
void	AddAAPseudoCounts (ost::seq::ProfileHandle &profile, const ContextProfileDB &db, Real a=0.9, Real b=4.0, Real c=1.0)
void	AddNullPseudoCounts (ost::seq::ProfileHandle &profile)