ContextProfile Class Reference

#include <hmm_pseudo_counts.hh>

Public Member Functions
	ContextProfile (int length)
	ContextProfile (int length, Real *data)
void	SetWeight (int pos, char olc, Real weight)
void	SetPseudoCount (char olc, Real count)
void	SetBias (Real bias)
const Real *	GetWeights (int pos) const
Real	GetWeight (int pos, char olc)
const Real *	GetPseudoCounts () const
Real	GetPseudoCount (char olc)
Real	GetBias () const
const std::vector< Real > &	GetData () const
int	GetLength () const

Static Public Member Functions
static int	DataSize (int length)

Detailed Description

Definition at line 32 of file hmm_pseudo_counts.hh.

Constructor & Destructor Documentation

ContextProfile() [1/2]

ContextProfile ( int  length )

inline

Definition at line 36 of file hmm_pseudo_counts.hh.

ContextProfile() [2/2]

ContextProfile ( int  length, Real *  data  )

inline

Definition at line 39 of file hmm_pseudo_counts.hh.

Member Function Documentation

DataSize()

static int DataSize ( int  length )

inlinestatic

Definition at line 103 of file hmm_pseudo_counts.hh.

GetBias()

Real GetBias ( ) const

inline

Definition at line 97 of file hmm_pseudo_counts.hh.

GetData()

const std::vector<Real>& GetData ( ) const

inline

Definition at line 99 of file hmm_pseudo_counts.hh.

GetLength()

int GetLength ( ) const

inline

Definition at line 101 of file hmm_pseudo_counts.hh.

GetPseudoCount()

Real GetPseudoCount ( char  olc )

inline

Definition at line 88 of file hmm_pseudo_counts.hh.

GetPseudoCounts()

const Real* GetPseudoCounts ( ) const

inline

Definition at line 86 of file hmm_pseudo_counts.hh.

GetWeight()

Real GetWeight ( int  pos, char  olc  )

inline

Definition at line 74 of file hmm_pseudo_counts.hh.

GetWeights()

const Real* GetWeights ( int  pos ) const

inline

Definition at line 67 of file hmm_pseudo_counts.hh.

SetBias()

void SetBias ( Real  bias )

inline

Definition at line 65 of file hmm_pseudo_counts.hh.

SetPseudoCount()

void SetPseudoCount ( char  olc, Real  count  )

inline

Definition at line 56 of file hmm_pseudo_counts.hh.

SetWeight()

void SetWeight ( int  pos, char  olc, Real  weight  )

inline

Definition at line 44 of file hmm_pseudo_counts.hh.

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The documentation for this class was generated from the following file:

• build-dev-doc/stage/include/ost/seq/alg/hmm_pseudo_counts.hh