OpenStructure
alignment_view_object.hh
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1 //------------------------------------------------------------------------------
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3 //
4 // Copyright (C) 2008-2020 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
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17 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
18 //------------------------------------------------------------------------------
19 #ifndef OST_SEQUENCE_VIEWER_ALIGNMENT_VIEW_OBJECT
20 #define OST_SEQUENCE_VIEWER_ALIGNMENT_VIEW_OBJECT
21 
22 /*
23  Author: Stefan Scheuber
24  */
25 
26 #ifndef Q_MOC_RUN
27 
29 
30 #include <ost/gfx/gradient.hh>
31 
32 #include "sequence_view_object.hh"
33 #endif
34 
35 namespace ost { namespace gui {
36 
38 {
39  Q_OBJECT
40 
41 public:
42  AlignmentViewObject(const seq::AlignmentHandle& alignment, QObject* parent = 0);
43 
44  QVariant GetData(int row, int column, int role);
46 
47  void SetDisplayMode(const QString& mode);
48 
49 private:
50  gfx::Gradient gradient_;
51  seq::AlignmentHandle alignment_;
52  QMap<int, QColor> conservation_1_;
53  QMap<int, QColor> conservation_2_;
54 
55  static QMap<QString,int> group_map_;
56 
57  static const QString conservation_mode_1;
58  static const QString conservation_mode_2;
59 };
60 
61 
62 }}
63 
64 #endif
color gradient
Definition: gradient.hh:59
void SetDisplayMode(const QString &mode)
AlignmentViewObject(const seq::AlignmentHandle &alignment, QObject *parent=0)
QVariant GetData(int row, int column, int role)
const seq::AlignmentHandle & GetAlignment()
representation of a multiple sequence alignemnt consisting of two or more sequences
def alignment(query_db, trg_db, resultDB, directory, resultDB_m8, sen=None, exe_path=None, start_sens=None, sens_steps=None, fmt=None)
Definition: mmseqs2.py:57
Definition: base.dox:1