OpenStructure
sequence_similarity.hh
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18 //------------------------------------------------------------------------------
19 #ifndef OST_SEQ_SEQUENCE_SIMILARITY_HH
20 #define OST_SEQ_SEQUENCE_SIMILARITY_HH
21 
25 
26 namespace ost { namespace seq { namespace alg {
27 
35  bool normalize=false, int seq_a=0, int seq_b=1);
36 
37 }}}
38 
39 #endif
representation of a multiple sequence alignemnt consisting of two or more sequences
float Real
Definition: base.hh:44
Real DLLEXPORT_OST_SEQ_ALG SequenceSimilarity(const AlignmentHandle &aln, SubstWeightMatrixPtr subst, bool normalize=false, int seq_a=0, int seq_b=1)
calculate sequence similarity for two sequences in an alignment
boost::shared_ptr< SubstWeightMatrix > SubstWeightMatrixPtr
Definition: base.dox:1
#define DLLEXPORT_OST_SEQ_ALG