Inherits _lDDTDecomposer.
Public Member Functions | |
| def | __init__ (self, ref, mdl, ref_chem_groups, mdl_chem_groups, ref_mdl_alns, inclusion_radius=15.0, thresholds=[0.5, 1.0, 2.0, 4.0], steep_opt_rate=None) |
| def | ExtendMapping (self, mapping, max_ext=None) |
 Public Member Functions inherited from _lDDTDecomposer | |
| def | __init__ (self, ref, mdl, ref_mdl_alns, inclusion_radius=15.0, thresholds=[0.5, 1.0, 2.0, 4.0]) |
| def | lDDT (self, ref_chain_groups, mdl_chain_groups) |
| def | lDDTFromFlatMap (self, flat_map) |
| def | SCCounts (self, ref_ch, mdl_ch) |
| def | IntCounts (self, ref_ch1, ref_ch2, mdl_ch1, mdl_ch2) |
Detailed Description
Definition at line 2176 of file chain_mapping.py.
Constructor & Destructor Documentation
◆ __init__()
| def __init__ | ( | self, | |
| ref, | |||
| mdl, | |||
| ref_chem_groups, | |||
| mdl_chem_groups, | |||
| ref_mdl_alns, | |||
inclusion_radius = 15.0, |
|||
thresholds = [0.5, 1.0, 2.0, 4.0], |
|||
steep_opt_rate = None |
|||
| ) |
Greedy extension of already existing but incomplete chain mappings
Definition at line 2177 of file chain_mapping.py.
Member Function Documentation
◆ ExtendMapping()
| def ExtendMapping | ( | self, | |
| mapping, | |||
max_ext = None |
|||
| ) |
Definition at line 2217 of file chain_mapping.py.
Field Documentation
◆ mdl_ch_group_mapper
| mdl_ch_group_mapper |
Definition at line 2196 of file chain_mapping.py.
◆ mdl_chem_groups
| mdl_chem_groups |
Definition at line 2194 of file chain_mapping.py.
◆ mdl_neighbors
| mdl_neighbors |
Definition at line 2206 of file chain_mapping.py.
◆ neighbors
| neighbors |
Definition at line 2187 of file chain_mapping.py.
◆ ref_ch_group_mapper
| ref_ch_group_mapper |
Definition at line 2195 of file chain_mapping.py.
◆ ref_chem_groups
| ref_chem_groups |
Definition at line 2193 of file chain_mapping.py.
◆ steep_opt_rate
| steep_opt_rate |
Definition at line 2186 of file chain_mapping.py.
The documentation for this class was generated from the following file:
- build-dev-doc/stage/lib64/python3.9/site-packages/ost/mol/alg/chain_mapping.py
