Inherited by _lDDTGreedySearcher.

Public Member Functions
def	__init__ (self, ref, mdl, ref_mdl_alns, inclusion_radius=15.0, thresholds=[0.5, 1.0, 2.0, 4.0])

def	lDDT (self, ref_chain_groups, mdl_chain_groups)

def	lDDTFromFlatMap (self, flat_map)

def	SCCounts (self, ref_ch, mdl_ch)

def	IntCounts (self, ref_ch1, ref_ch2, mdl_ch1, mdl_ch2)

Data Fields
	ref

	mdl

	ref_mdl_alns

	inclusion_radius

	thresholds

	ref_chains

	ref_interfaces

	single_chain_scorer

	single_chain_cache

	interface_scorer

	interface_cache

	n

Detailed Description

Definition at line 2031 of file chain_mapping.py.

Constructor & Destructor Documentation

◆ init()

def __init__	(	self,
		ref,
		mdl,
		ref_mdl_alns,
		inclusion_radius = `15.0`,
		thresholds = `[0.5, 1.0, 2.0, 4.0]`
	)

 Compute backbone only lDDT scores for ref/mdl

Uses the pairwise decomposable property of backbone only lDDT and
implements a caching mechanism to efficiently enumerate different
chain mappings.

Definition at line 2033 of file chain_mapping.py.

Member Function Documentation

◆ IntCounts()

def IntCounts	(	self,
		ref_ch1,
		ref_ch2,
		mdl_ch1,
		mdl_ch2
	)

Definition at line 2156 of file chain_mapping.py.

◆ lDDT()

def lDDT	(	self,
		ref_chain_groups,
		mdl_chain_groups
	)

Definition at line 2112 of file chain_mapping.py.

◆ lDDTFromFlatMap()

def lDDTFromFlatMap	(	self,
		flat_map
	)

Definition at line 2122 of file chain_mapping.py.

◆ SCCounts()

def SCCounts	(	self,
		ref_ch,
		mdl_ch
	)

Definition at line 2141 of file chain_mapping.py.

Field Documentation

◆ inclusion_radius

inclusion_radius

Definition at line 2045 of file chain_mapping.py.

◆ interface_cache

interface_cache

Definition at line 2067 of file chain_mapping.py.

◆ interface_scorer

interface_scorer

Definition at line 2062 of file chain_mapping.py.

◆ mdl

mdl

Definition at line 2043 of file chain_mapping.py.

◆ n

n

Definition at line 2069 of file chain_mapping.py.

◆ ref

ref

Definition at line 2042 of file chain_mapping.py.

◆ ref_chains

ref_chains

Definition at line 2049 of file chain_mapping.py.

◆ ref_interfaces

ref_interfaces

Definition at line 2050 of file chain_mapping.py.

◆ ref_mdl_alns

ref_mdl_alns

Definition at line 2044 of file chain_mapping.py.

◆ single_chain_cache

single_chain_cache

Definition at line 2058 of file chain_mapping.py.

◆ single_chain_scorer

single_chain_scorer

Definition at line 2054 of file chain_mapping.py.

◆ thresholds

thresholds

Definition at line 2046 of file chain_mapping.py.

The documentation for this class was generated from the following file:

build-dev-doc/stage/lib64/python3.9/site-packages/ost/mol/alg/chain_mapping.py

Public Member Functions

Data Fields