Inherits QSScorer.
Public Member Functions | |
| def | __init__ (self, ref, mdl, ref_chem_groups, mdl_chem_groups, ref_mdl_alns, contact_d=12.0, steep_opt_rate=None, greedy_prune_contact_map=False) |
| def | SCCounts (self, ref_ch, mdl_ch) |
| def | ExtendMapping (self, mapping, max_ext=None) |
 Public Member Functions inherited from QSScorer | |
| def | __init__ (self, target, chem_groups, model, alns, contact_d=12.0) |
| def | qsent1 (self) |
| def | chem_groups (self) |
| def | qsent2 (self) |
| def | alns (self) |
| def | Score (self, mapping, check=True) |
| def | ScoreInterface (self, trg_ch1, trg_ch2, mdl_ch1, mdl_ch2) |
| def | FromFlatMapping (self, flat_mapping) |
Data Fields | |
| ref | |
| mdl | |
| ref_mdl_alns | |
| steep_opt_rate | |
| neighbors | |
| mdl_neighbors | |
| ref_chem_groups | |
| mdl_chem_groups | |
| ref_ch_group_mapper | |
| mdl_ch_group_mapper | |
| single_chain_scorer | |
| single_chain_cache | |
Additional Inherited Members | |
| Static Public Member Functions inherited from QSScorer | |
| def | FromMappingResult (mapping_result) |
Detailed Description
Definition at line 2592 of file chain_mapping.py.
Constructor & Destructor Documentation
◆ __init__()
| def __init__ | ( | self, | |
| ref, | |||
| mdl, | |||
| ref_chem_groups, | |||
| mdl_chem_groups, | |||
| ref_mdl_alns, | |||
contact_d = 12.0, |
|||
steep_opt_rate = None, |
|||
greedy_prune_contact_map = False |
|||
| ) |
Greedy extension of already existing but incomplete chain mappings
Definition at line 2593 of file chain_mapping.py.
Member Function Documentation
◆ ExtendMapping()
| def ExtendMapping | ( | self, | |
| mapping, | |||
max_ext = None |
|||
| ) |
Definition at line 2667 of file chain_mapping.py.
◆ SCCounts()
| def SCCounts | ( | self, | |
| ref_ch, | |||
| mdl_ch | |||
| ) |
Definition at line 2652 of file chain_mapping.py.
Field Documentation
◆ mdl
| mdl |
Definition at line 2601 of file chain_mapping.py.
◆ mdl_ch_group_mapper
| mdl_ch_group_mapper |
Definition at line 2634 of file chain_mapping.py.
◆ mdl_chem_groups
| mdl_chem_groups |
Definition at line 2632 of file chain_mapping.py.
◆ mdl_neighbors
| mdl_neighbors |
Definition at line 2612 of file chain_mapping.py.
◆ neighbors
| neighbors |
Definition at line 2606 of file chain_mapping.py.
◆ ref
| ref |
Definition at line 2600 of file chain_mapping.py.
◆ ref_ch_group_mapper
| ref_ch_group_mapper |
Definition at line 2633 of file chain_mapping.py.
◆ ref_chem_groups
| ref_chem_groups |
Definition at line 2631 of file chain_mapping.py.
◆ ref_mdl_alns
| ref_mdl_alns |
Definition at line 2602 of file chain_mapping.py.
◆ single_chain_cache
| single_chain_cache |
Definition at line 2646 of file chain_mapping.py.
◆ single_chain_scorer
| single_chain_scorer |
Definition at line 2645 of file chain_mapping.py.
◆ steep_opt_rate
| steep_opt_rate |
Definition at line 2603 of file chain_mapping.py.
The documentation for this class was generated from the following file:
- build-dev-doc/stage/lib64/python3.9/site-packages/ost/mol/alg/chain_mapping.py
