OpenStructure
Public Member Functions | Data Fields
HHblitsHit Class Reference

Public Member Functions

def __init__ (self, hit_id, aln, score, ss_score, evalue, pvalue, prob)
 

Data Fields

 hit_id
 
 aln
 
 score
 
 ss_score
 
 evalue
 
 prob
 
 pvalue
 

Detailed Description

A hit found by HHblits

.. attribute:: hit_id

  String identifying the hit

  :type: :class:`str`

.. attribute:: aln

  Pairwise alignment containing the aligned part between the query and the
  target. First sequence is the query, the second sequence the target.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: score

  The alignment score

  :type: :class:`float`

.. attribute:: ss_score

  The secondary structure score

  :type: :class:`float`

.. attribute:: evalue

  The E-value of the alignment

  :type: :class:`float`

.. attribute:: pvalue

  The P-value of the alignment

  :type: :class:`float`

.. attribute:: prob

  The probability of the alignment (between 0 and 100)

  :type: :class:`float`

Definition at line 14 of file hhblits3.py.

Constructor & Destructor Documentation

◆ __init__()

def __init__ (   self,
  hit_id,
  aln,
  score,
  ss_score,
  evalue,
  pvalue,
  prob 
)

Definition at line 61 of file hhblits3.py.

Field Documentation

◆ aln

aln

Definition at line 63 of file hhblits3.py.

◆ evalue

evalue

Definition at line 66 of file hhblits3.py.

◆ hit_id

hit_id

Definition at line 62 of file hhblits3.py.

◆ prob

prob

Definition at line 67 of file hhblits3.py.

◆ pvalue

pvalue

Definition at line 68 of file hhblits3.py.

◆ score

score

Definition at line 64 of file hhblits3.py.

◆ ss_score

ss_score

Definition at line 65 of file hhblits3.py.


The documentation for this class was generated from the following file: