AlignedColumn Class Reference

#include <aligned_column.hh>

Public Member Functions
	AlignedColumn (const AlignmentHandle &aln, int index)
	AlignedColumn ()
int	GetIndex () const
char	operator[] (int row) const
int	GetResidueIndex (int row) const
int	GetRowCount () const
mol::ResidueView	GetResidue (int row) const

Detailed Description

Provides access to a column in a aligned region or a sequence alignment.

Definition at line 31 of file aligned_column.hh.

Constructor & Destructor Documentation

AlignedColumn() [1/2]

AlignedColumn	(	const AlignmentHandle &	aln,
		int	index
	)

AlignedColumn() [2/2]

AlignedColumn

(

)

construct empty (invalid) aligned column

Member Function Documentation

GetIndex()

int GetIndex

(

)

const

get index of column

See also

AlignmentHandle::GetIndex()

GetResidue()

mol::ResidueView GetResidue

(

int

row

)

const

get residue at row

See also

AlignmentHandle::GetResidue()

GetResidueIndex()

int GetResidueIndex

(

int

row

)

const

get residue index at row

See also

AlignmentHandle::GetResidueIndex()

GetRowCount()

int GetRowCount

(

)

const

get number of rows

See also

AlignmentHandle::GetCount()

operator[]()

char operator[]

(

int

row

)

const

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The documentation for this class was generated from the following file:

• build-dev-doc/stage/include/ost/seq/aligned_column.hh