ContactScorerResultICS Class Reference

Public Member Functions
def	__init__ (self, n_trg_contacts, n_mdl_contacts, n_union, n_intersection)
def	n_trg_contacts (self)
def	n_mdl_contacts (self)
def	precision (self)
def	recall (self)
def	ics (self)

Detailed Description

Holds data relevant to compute ics

Definition at line 302 of file contact_score.py.

Constructor & Destructor Documentation

__init__()

def __init__	(		self,
			n_trg_contacts,
			n_mdl_contacts,
			n_union,
			n_intersection
	)

Definition at line 306 of file contact_score.py.

Member Function Documentation

ics()

def ics

(

self

)

 The Interface Contact Similarity score (ICS)

Combination of :attr:`precision` and :attr:`recall` using the F1-measure

:type: :class:`float`

Definition at line 355 of file contact_score.py.

n_mdl_contacts()

def n_mdl_contacts

(

self

)

 Number of contacts in model

:type: :class:`int`

Definition at line 321 of file contact_score.py.

n_trg_contacts()

def n_trg_contacts

(

self

)

 Number of contacts in target

:type: :class:`int`

Definition at line 313 of file contact_score.py.

precision()

def precision

(

self

)

 Precision of model contacts

The fraction of model contacts that are also present in target

:type: :class:`int`

Definition at line 329 of file contact_score.py.

recall()

def recall

(

self

)

 Recall of model contacts

The fraction of target contacts that are also present in model

:type: :class:`int`

Definition at line 342 of file contact_score.py.

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The documentation for this class was generated from the following file:

• build-dev-doc/stage/lib64/python3.9/site-packages/ost/mol/alg/contact_score.py