Public Member Functions
def	__init__ (self, aln, bit_score, score, evalue, seqid)

Data Fields
	aln

	bit_score

	score

	evalue

	seqid

Detailed Description

An aligned patch, aka. HSP

.. attribute:: aln

  The local alignment. Sequence offset of both sequences in the alignment are
  set to the starting position in the query and target sequence, respectively.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: bit_score

  The bit score of the HSP

.. attribute:: score

  The score of the HSP

.. attribute:: evalue

  The E-value of the HSP

.. attribute:: seqid

  The sequence identity of the HSP

Definition at line 8 of file blast.py.

Constructor & Destructor Documentation

◆ init()

def __init__	(	self,
		aln,
		bit_score,
		score,
		evalue,
		seqid
	)

Definition at line 35 of file blast.py.

Field Documentation

◆ aln

aln

Definition at line 36 of file blast.py.

◆ bit_score

bit_score

Definition at line 37 of file blast.py.

◆ evalue

evalue

Definition at line 39 of file blast.py.

◆ score

score

Definition at line 38 of file blast.py.

◆ seqid

seqid

Definition at line 40 of file blast.py.

The documentation for this class was generated from the following file:

build-dev-doc/stage/lib64/python3.9/site-packages/ost/bindings/blast.py

Public Member Functions

Data Fields