OpenStructure
Public Types | Public Member Functions
SequenceListImpl Class Reference

#include <sequence_list_impl.hh>

Public Types

typedef SequenceImplListConstIterator ConstIterator
 
typedef SequenceImplListIterator Iterator
 

Public Member Functions

 SequenceListImpl ()
 
void AddSequence (const SequenceImplPtr &sequence)
 
int GetCount () const
 
SequenceImplPtr & GetSequence (int i)
 
const SequenceImplPtr & GetSequence (unsigned int i) const
 
void RemoveSequence (int index)
 
int GetPos (int seq_index, int residue_index) const
 
int GetResidueIndex (int seq_index, int pos) const
 
SequenceImplPtr FindSequence (const String &name) const
 
int FindSequenceIndex (const String &name) const
 
String ToString (int width=80) const
 
SequenceListImplPtr Slice (int first, int n) const
 
int GetMinLength () const
 
int GetMaxLength () const
 
bool SequencesHaveEqualLength () const
 
Real GetCoverage (int seq_index) const
 
SequenceListImplPtr Copy () const
 
Iterator Begin ()
 
Iterator End ()
 
ConstIterator Begin () const
 
ConstIterator End () const
 

Detailed Description

Definition at line 33 of file sequence_list_impl.hh.

Member Typedef Documentation

◆ ConstIterator

typedef SequenceImplListConstIterator ConstIterator

Definition at line 35 of file sequence_list_impl.hh.

◆ Iterator

typedef SequenceImplListIterator Iterator

Definition at line 36 of file sequence_list_impl.hh.

Constructor & Destructor Documentation

◆ SequenceListImpl()

SequenceListImpl ( )
inline

Definition at line 37 of file sequence_list_impl.hh.

Member Function Documentation

◆ AddSequence()

void AddSequence ( const SequenceImplPtr &  sequence)

add sequence

◆ Begin() [1/2]

Iterator Begin ( )
inline

Definition at line 87 of file sequence_list_impl.hh.

◆ Begin() [2/2]

ConstIterator Begin ( ) const
inline

Definition at line 89 of file sequence_list_impl.hh.

◆ Copy()

SequenceListImplPtr Copy ( ) const

◆ End() [1/2]

Iterator End ( )
inline

Definition at line 88 of file sequence_list_impl.hh.

◆ End() [2/2]

ConstIterator End ( ) const
inline

Definition at line 90 of file sequence_list_impl.hh.

◆ FindSequence()

SequenceImplPtr FindSequence ( const String &  name) const

◆ FindSequenceIndex()

int FindSequenceIndex ( const String &  name) const

◆ GetCount()

int GetCount ( ) const
inline

get number of sequences in list

Definition at line 42 of file sequence_list_impl.hh.

◆ GetCoverage()

Real GetCoverage ( int  seq_index) const

◆ GetMaxLength()

int GetMaxLength ( ) const

◆ GetMinLength()

int GetMinLength ( ) const

◆ GetPos()

int GetPos ( int  seq_index,
int  residue_index 
) const

◆ GetResidueIndex()

int GetResidueIndex ( int  seq_index,
int  pos 
) const

◆ GetSequence() [1/2]

SequenceImplPtr& GetSequence ( int  i)
inline

Definition at line 44 of file sequence_list_impl.hh.

◆ GetSequence() [2/2]

const SequenceImplPtr& GetSequence ( unsigned int  i) const
inline

Definition at line 52 of file sequence_list_impl.hh.

◆ RemoveSequence()

void RemoveSequence ( int  index)

◆ SequencesHaveEqualLength()

bool SequencesHaveEqualLength ( ) const
inline

Definition at line 78 of file sequence_list_impl.hh.

◆ Slice()

SequenceListImplPtr Slice ( int  first,
int  n 
) const

◆ ToString()

String ToString ( int  width = 80) const
The documentation for this class was generated from the following file:
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