OpenStructure
Public Member Functions | Static Public Member Functions
Domains Class Reference

#include <domain_find.hh>

Public Member Functions

size_t GetNumFreeResidues () const
 
Real GetFreeD () const
 
Real GetFreeS () const
 
const std::vector< Domain > & GetDomains () const
 
const std::vector< int > & GetComponents () const
 
ost::img::ImageHandle GetAdjMap () const
 

Static Public Member Functions

static DomainsPtr FromAln (ost::seq::AlignmentHandle aln, Real tolerance, Real radius, Real threshold, int idx_a=-1, int idx_b=-1)
 
static DomainsPtr FromCOM (const SimilarityMatrix &sim, ost::seq::AlignmentHandle aln, Real tolerance, int idx_a=-1, int idx_b=-1)
 
static DomainsPtr FromDistMats (const DistanceMatrix &dmat_a, const DistanceMatrix &dmat_b, Real tolerance, Real radius, Real threshold, int num_threads, bool defined_only, bool adj_map)
 

Detailed Description

Definition at line 34 of file domain_find.hh.

Member Function Documentation

◆ FromAln()

static DomainsPtr FromAln ( ost::seq::AlignmentHandle  aln,
Real  tolerance,
Real  radius,
Real  threshold,
int  idx_a = -1,
int  idx_b = -1 
)
static

◆ FromCOM()

static DomainsPtr FromCOM ( const SimilarityMatrix sim,
ost::seq::AlignmentHandle  aln,
Real  tolerance,
int  idx_a = -1,
int  idx_b = -1 
)
static

◆ FromDistMats()

static DomainsPtr FromDistMats ( const DistanceMatrix dmat_a,
const DistanceMatrix dmat_b,
Real  tolerance,
Real  radius,
Real  threshold,
int  num_threads,
bool  defined_only,
bool  adj_map 
)
static

◆ GetAdjMap()

ost::img::ImageHandle GetAdjMap ( ) const
inline

Definition at line 65 of file domain_find.hh.

◆ GetComponents()

const std::vector<int>& GetComponents ( ) const
inline

Definition at line 63 of file domain_find.hh.

◆ GetDomains()

const std::vector<Domain>& GetDomains ( ) const
inline

Definition at line 62 of file domain_find.hh.

◆ GetFreeD()

Real GetFreeD ( ) const
inline

Definition at line 59 of file domain_find.hh.

◆ GetFreeS()

Real GetFreeS ( ) const
inline

Definition at line 60 of file domain_find.hh.

◆ GetNumFreeResidues()

size_t GetNumFreeResidues ( ) const
inline

Definition at line 57 of file domain_find.hh.


The documentation for this class was generated from the following file: