iAlignResult Class Reference

Public Member Functions

def __init__

Data Fields

 rmsd
 transform
 alignment
 is_score
 aligned_residues
 aligned_contacts

Detailed Description

Holds the result of running iAlign

.. attribute:: rmsd
  
  The RMSD of the common Calpha atoms of both structures

.. attribute:: transform

  The transform that superposes the model onto the reference structure.
  
  :type: :class:`~ost.geom.Mat4`

.. attribute:: alignment

  The alignment of the structures, that is the pairing of Calphas of both 
  structures. Since the programs only read ATOM records, residues consisting 
  of HETATMs (MSE) are not included in the alignment.
  
  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: IS_score

  The IS-score of the structural superposition

.. attribute:: aligned_residues

  The total number of aligned residues

.. attribute:: aligned_contacts

  The total number of aligned contacts

Definition at line 55 of file ialign.py.


Member Function Documentation

def __init__ (   self,
  rmsd,
  transform,
  alignment,
  is_score,
  aligned_residues,
  aligned_contacts 
)

Definition at line 90 of file ialign.py.


Field Documentation

Definition at line 97 of file ialign.py.

Definition at line 96 of file ialign.py.

Definition at line 94 of file ialign.py.

Definition at line 95 of file ialign.py.

Definition at line 92 of file ialign.py.

Definition at line 93 of file ialign.py.


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