FastaIOHandler Class Reference

#include <fasta_io_handler.hh>

Inherits ost::io::SequenceIOHandler, and ost::io::SequenceIOHandler.

Public Member Functions

virtual void Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void Import (seq::SequenceList &aln, std::istream &instream)
virtual void Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
virtual void Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void Import (seq::SequenceList &aln, std::istream &instream)
virtual void Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const

Static Public Member Functions

static bool ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String GetFormatName ()
static String GetFormatDescription ()
static bool ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String GetFormatName ()
static String GetFormatDescription ()

Detailed Description

Definition at line 29 of file fasta_io_handler.hh.


Member Function Documentation

virtual void Export ( const seq::ConstSequenceList aln,
std::ostream &  ostream 
) const [virtual]

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList aln,
const boost::filesystem::path &  loc 
) const [virtual]

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList aln,
std::ostream &  ostream 
) const [virtual]

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList aln,
const boost::filesystem::path &  loc 
) const [virtual]

Implements SequenceIOHandler.

static String GetFormatDescription (  )  [inline, static]

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatDescription (  )  [inline, static]

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatName (  )  [inline, static]

Definition at line 47 of file fasta_io_handler.hh.

static String GetFormatName (  )  [inline, static]

Definition at line 47 of file fasta_io_handler.hh.

virtual void Import ( seq::SequenceList aln,
std::istream &  instream 
) [virtual]

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList aln,
const boost::filesystem::path &  loc 
) [virtual]

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList aln,
std::istream &  instream 
) [virtual]

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList aln,
const boost::filesystem::path &  loc 
) [virtual]

Implements SequenceIOHandler.

static bool ProvidesExport ( const boost::filesystem::path &  loc,
const String format = "auto" 
) [static]
static bool ProvidesExport ( const boost::filesystem::path &  loc,
const String format = "auto" 
) [static]
static bool ProvidesImport ( const boost::filesystem::path &  loc,
const String format = "auto" 
) [static]
static bool ProvidesImport ( const boost::filesystem::path &  loc,
const String format = "auto" 
) [static]

The documentation for this class was generated from the following files:
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Generated on 10 Nov 2016 for OpenStructure by  doxygen 1.6.1