HHblitsHeader Class Reference

Public Member Functions

def __init__

Data Fields

 query
 match_columns
 n_eff
 searched_hmms
 date
 command

Detailed Description

Stats from the beginning of search output.

.. attribute:: query

  The name of the query sequence

  :type: :class:`str`

.. attribute:: match_columns

  Total of aligned Match columns

  :type: :class:`int`

.. attribute:: n_eff

  Value of the ``-neff`` option

  :type: :class:`float`

.. attribute:: searched_hmms

  Number of profiles searched

  :type: :class:`int`

.. attribute:: date

  Execution date

  :type: :class:`datetime.datetime`

.. attribute:: command

  Command used to run

  :type: :class:`str`

Definition at line 70 of file hhblits.py.


Member Function Documentation

def __init__ (   self  ) 

Definition at line 109 of file hhblits.py.


Field Documentation

Definition at line 115 of file hhblits.py.

Definition at line 114 of file hhblits.py.

Definition at line 111 of file hhblits.py.

Definition at line 112 of file hhblits.py.

Definition at line 110 of file hhblits.py.

Definition at line 113 of file hhblits.py.


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