AminoAcidSet Class Reference

Amino acid bit set. More...

#include <amino_acids.hh>

Public Types

typedef AminoAcidSetIterator Iterator

Public Member Functions

 AminoAcidSet ()
void Add (AminoAcid amino_acid)
void Remove (AminoAcid amino_acid)
bool Contains (AminoAcid amino_acid) const
bool Empty () const
Iterator Begin () const
Iterator End () const
bool operator== (const AminoAcidSet &rhs) const
bool operator!= (const AminoAcidSet &rhs) const
template<typename DS >
void Serialize (DS &ds)

Static Public Member Functions

static AminoAcidSet CreatePolarSet ()
static AminoAcidSet CreateAromaticSet ()
static AminoAcidSet CreateApolarSet ()
static AminoAcidSet CreateSet (AminoAcid aa)
static std::vector< AminoAcidSetCreateCompleteSet ()
static std::vector< AminoAcidSetCreateThreeStateSet ()
static std::vector< AminoAcidSetCreatePseudoSet ()

Detailed Description

Amino acid bit set.

Definition at line 98 of file amino_acids.hh.


Member Typedef Documentation

Definition at line 100 of file amino_acids.hh.


Constructor & Destructor Documentation

AminoAcidSet (  ) 

Member Function Documentation

void Add ( AminoAcid  amino_acid  ) 

add another amino acid

Iterator Begin (  )  const

iterator pointing to the beginning of the amino acid set

 for (AminoAcidSet::iterator i=aa_set.Begin(), e=aa_set.End(); i!=e; ++i) {
   . . .
 }

will iterate over all the amino acids present in the set.

bool Contains ( AminoAcid  amino_acid  )  const

whether the set contains a given amino acid

static AminoAcidSet CreateApolarSet (  )  [static]
static AminoAcidSet CreateAromaticSet (  )  [static]
static std::vector<AminoAcidSet> CreateCompleteSet (  )  [static]
static AminoAcidSet CreatePolarSet (  )  [static]
static std::vector<AminoAcidSet> CreatePseudoSet (  )  [static]
static AminoAcidSet CreateSet ( AminoAcid  aa  )  [static]
static std::vector<AminoAcidSet> CreateThreeStateSet (  )  [static]
bool Empty (  )  const

whether the set is empty

Iterator End (  )  const

iterator pointing to the end of the amino acids.

bool operator!= ( const AminoAcidSet rhs  )  const
bool operator== ( const AminoAcidSet rhs  )  const
void Remove ( AminoAcid  amino_acid  ) 
void Serialize ( DS &  ds  )  [inline]

Definition at line 147 of file amino_acids.hh.


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