AlignmentOpts Struct Reference

options for local and global sequence alignment algorithms More...

#include <alignment_opts.hh>

Public Member Functions

 AlignmentOpts (int gap_open, int gap_ext, const SubstWeightMatrixPtr &weights)

Data Fields

int gap_open_penalty
int gap_extension_penalty
SubstWeightMatrixPtr subst_weights

Detailed Description

options for local and global sequence alignment algorithms

See also:
LocalSequenceAlign, GlobalSequenceAlign

Definition at line 32 of file alignment_opts.hh.


Constructor & Destructor Documentation

AlignmentOpts ( int  gap_open,
int  gap_ext,
const SubstWeightMatrixPtr weights 
) [inline]

Definition at line 33 of file alignment_opts.hh.


Field Documentation

Definition at line 40 of file alignment_opts.hh.

Definition at line 39 of file alignment_opts.hh.

Definition at line 41 of file alignment_opts.hh.


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