OpenStructure
 All Data Structures Namespaces Files Functions Variables Typedefs Enumerations Enumerator Properties Friends Macros Groups Pages
Public Member Functions | Data Fields
TMScoreResult Class Reference

Public Member Functions

def __init__
 

Data Fields

 rmsd_common
 
 tm_score
 
 max_sub
 
 gdt_ts
 
 gdt_ha
 
 rmsd_below_five
 
 transform
 

Detailed Description

Holds the result of running TMscore

.. attribute:: rmsd_common
  
  The RMSD of the common Calpha atoms of both structures

  .. attribute:: rmsd_below_five

    The RMSD of all Calpha atoms that can be superposed below five Angstroem
  
.. attribute:: tm_score

  The TM-score of the structural superposition

.. attribute:: transform

  The transform that superposes the model onto the reference structure.
  
  :type: :class:`~ost.geom.Mat4`

.. attribute:: gdt_ha

  The GDT_HA of the model to the reference structure.

.. attribute:: gdt_ts

  The GDT_TS of the model to the reference structure.

Definition at line 175 of file tmtools.py.

Constructor & Destructor Documentation

def __init__ (   self,
  rmsd_common,
  tm_score,
  max_sub,
  gdt_ts,
  gdt_ha,
  rmsd_below_five,
  transform 
)

Definition at line 207 of file tmtools.py.

Field Documentation

gdt_ha

Definition at line 212 of file tmtools.py.

gdt_ts

Definition at line 211 of file tmtools.py.

max_sub

Definition at line 210 of file tmtools.py.

rmsd_below_five

Definition at line 213 of file tmtools.py.

rmsd_common

Definition at line 208 of file tmtools.py.

tm_score

Definition at line 209 of file tmtools.py.

transform

Definition at line 214 of file tmtools.py.


The documentation for this class was generated from the following file: