nonstandard.hh

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//------------------------------------------------------------------------------
// This file is part of the OpenStructure project <www.openstructure.org>
//
// Copyright (C) 2008-2011 by the OpenStructure authors
//
// This library is free software; you can redistribute it and/or modify it under
// the terms of the GNU Lesser General Public License as published by the Free
// Software Foundation; either version 3.0 of the License, or (at your option)
// any later version.
// This library is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
// details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with this library; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
//------------------------------------------------------------------------------

#ifndef OST_MOL_ALG_NONSTANDARD_HH
#define OST_MOL_ALG_NONSTANDARD_HH
/*
  Author: Marco Biasini, Juergen Haas
 */
#include "module_config.hh"
#include <ost/conop/compound_lib.hh>



namespace ost { namespace mol { namespace alg {



                             
bool DLLEXPORT_OST_MOL_ALG CopyResidue(ost::mol::ResidueHandle src_res,
                                     ost::mol::ResidueHandle dst_res,
                                     ost::mol::XCSEditor& edi);

bool DLLEXPORT_OST_MOL_ALG CopyResidue(ost::mol::ResidueHandle src_res,
                                     ost::mol::ResidueHandle dst_res,
                                     ost::mol::XCSEditor& edi,
                                     ost::conop::CompoundLibPtr lib);

                             
bool DLLEXPORT_OST_MOL_ALG CopyIdentical(ost::mol::ResidueHandle src_res,
                                       ost::mol::ResidueHandle dst_res,
                                       ost::mol::XCSEditor& edi,
                                       bool& has_cbeta);



                             
bool DLLEXPORT_OST_MOL_ALG CopyConserved(ost::mol::ResidueHandle src_res, 
                                       ost::mol::ResidueHandle dst_res,
                                       ost::mol::XCSEditor& edi,
                                       bool& has_cbeta,
                                       ost::conop::CompoundLibPtr lib);



                             
bool DLLEXPORT_OST_MOL_ALG CopyConserved(ost::mol::ResidueHandle src_res, 
                                       ost::mol::ResidueHandle dst_res,
                                       ost::mol::XCSEditor& edi,
                                       bool& has_cbeta);




bool DLLEXPORT_OST_MOL_ALG CopyNonConserved(ost::mol::ResidueHandle src_res, 
                                          ost::mol::ResidueHandle dst_res,
                                          ost::mol::XCSEditor& edi,
                                          bool& has_cbeta);


bool DLLEXPORT_OST_MOL_ALG CopyMSE(ost::mol::ResidueHandle src_res, 
                                 ost::mol::ResidueHandle dst_res,
                                 ost::mol::XCSEditor& edi,
                                 bool& has_cbeta);
                       
                            
bool DLLEXPORT_OST_MOL_ALG CopyModified(ost::mol::ResidueHandle src_res, 
                                      ost::mol::ResidueHandle dst_res,
                                      ost::mol::XCSEditor& edi,
                                      bool& has_cbeta,
                                      ost::conop::CompoundLibPtr lib);



}}}

#endif