stage/include/ost/seq/alg/distance_map.hh File Reference

#include <numeric>
#include <cmath>
#include <algorithm>
#include <ost/tri_matrix.hh>
#include <ost/integrity_error.hh>
#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>

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Data Structures

struct  Distances
 Container for a pair wise distance for each structure. Each structure is identified by its index in the originally used alignment. More...
class  DistanceMap

Namespaces

namespace  ost
namespace  ost::seq
namespace  ost::seq::alg

Typedefs

typedef boost::shared_ptr
< DistanceMap > 
DistanceMapPtr

Functions

DistanceMapPtr
DLLEXPORT_OST_SEQ_ALG 
CreateDistanceMap (const seq::AlignmentHandle &alignment)
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