stage/include/ost/io/seq/load.hh File Reference

#include <ost/io/module_config.hh>
#include <ost/seq/sequence_list.hh>
#include <ost/seq/alignment_handle.hh>
#include <ost/seq/profile_handle.hh>

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Namespaces

namespace  ost
namespace  ost::io

Functions

seq::AlignmentHandle
DLLEXPORT_OST_IO 
LoadAlignment (const String &file_name, const String &format="auto")
seq::AlignmentHandle
DLLEXPORT_OST_IO 
AlignmentFromStream (std::istream &stream, const String &format)
seq::AlignmentHandle
DLLEXPORT_OST_IO 
AlignmentFromString (const String &data, const String &format)
seq::SequenceList DLLEXPORT_OST_IO LoadSequenceList (const String &file_name, const String &format="auto")
seq::SequenceList DLLEXPORT_OST_IO SequenceListFromStream (std::istream &stream, const String &format)
seq::SequenceList DLLEXPORT_OST_IO SequenceListFromString (const String &data, const String &format)
seq::SequenceHandle
DLLEXPORT_OST_IO 
LoadSequence (const String &file_name, const String &format="auto")
seq::SequenceHandle
DLLEXPORT_OST_IO 
SequenceFromStream (std::istream &stream, const String &format)
seq::SequenceHandle
DLLEXPORT_OST_IO 
SequenceFromString (const String &data, const String &format)
seq::ProfileHandlePtr
DLLEXPORT_OST_IO 
LoadSequenceProfile (const String &file_name, const String &format="auto")
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