Domains Class Reference

#include <domain_find.hh>

Public Member Functions

size_t GetNumFreeResidues () const
Real GetFreeD () const
Real GetFreeS () const
const std::vector< Domain > & GetDomains () const
const std::vector< int > & GetComponents () const
ost::img::ImageHandle GetAdjMap () const

Static Public Member Functions

static DomainsPtr FromAln (ost::seq::AlignmentHandle aln, Real tolerance, Real radius, Real threshold, int idx_a=-1, int idx_b=-1)
static DomainsPtr FromCOM (const SimilarityMatrix &sim, ost::seq::AlignmentHandle aln, Real tolerance, int idx_a=-1, int idx_b=-1)
static DomainsPtr FromDistMats (const DistanceMatrix &dmat_a, const DistanceMatrix &dmat_b, Real tolerance, Real radius, Real threshold, int num_threads, bool defined_only, bool adj_map)

Detailed Description

Definition at line 34 of file domain_find.hh.


Member Function Documentation

static DomainsPtr FromAln ( ost::seq::AlignmentHandle  aln,
Real  tolerance,
Real  radius,
Real  threshold,
int  idx_a = -1,
int  idx_b = -1 
) [static]
static DomainsPtr FromCOM ( const SimilarityMatrix sim,
ost::seq::AlignmentHandle  aln,
Real  tolerance,
int  idx_a = -1,
int  idx_b = -1 
) [static]
static DomainsPtr FromDistMats ( const DistanceMatrix dmat_a,
const DistanceMatrix dmat_b,
Real  tolerance,
Real  radius,
Real  threshold,
int  num_threads,
bool  defined_only,
bool  adj_map 
) [static]
ost::img::ImageHandle GetAdjMap (  )  const [inline]

Definition at line 65 of file domain_find.hh.

const std::vector<int>& GetComponents (  )  const [inline]

Definition at line 63 of file domain_find.hh.

const std::vector<Domain>& GetDomains (  )  const [inline]

Definition at line 62 of file domain_find.hh.

Real GetFreeD (  )  const [inline]

Definition at line 59 of file domain_find.hh.

Real GetFreeS (  )  const [inline]

Definition at line 60 of file domain_find.hh.

size_t GetNumFreeResidues (  )  const [inline]

Definition at line 57 of file domain_find.hh.


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