stage/include/ost/seq/alg/contact_prediction_score.hh File Reference

#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>
#include <ost/seq/alg/pair_subst_weight_matrix.hh>
#include <ost/seq/alg/contact_weight_matrix.hh>

Go to the source code of this file.

Data Structures

struct  ContactPredictionScoreResult

Namespaces

namespace  ost
namespace  ost::seq
namespace  ost::seq::alg

Functions

ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateContactScore (const AlignmentHandle &aln, ContactWeightMatrix w=LoadDefaultContactWeightMatrix())
ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateContactSubstitutionScore (const AlignmentHandle &aln, int ref_seq_index=0, PairSubstWeightMatrix w=LoadDefaultPairSubstWeightMatrix())
ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateMutualInformation (const AlignmentHandle &aln, ContactWeightMatrix w=LoadConstantContactWeightMatrix(), bool apc_correction=true, bool zpx_transformation=true, float small_number_correction=0.05)
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