AlignedColumn Class Reference

Provides access to a column in a aligned region or a sequence alignment. More...

#include <aligned_column.hh>

Public Member Functions

 AlignedColumn (const AlignmentHandle &aln, int index)
 AlignedColumn ()
int GetIndex () const
char operator[] (int row) const
int GetResidueIndex (int row) const
int GetRowCount () const
mol::ResidueView GetResidue (int row) const

Detailed Description

Provides access to a column in a aligned region or a sequence alignment.

Definition at line 31 of file aligned_column.hh.


Constructor & Destructor Documentation

AlignedColumn ( const AlignmentHandle aln,
int  index 
)
AlignedColumn (  ) 

construct empty (invalid) aligned column


Member Function Documentation

int GetIndex (  )  const

get index of column

See also:
AlignmentHandle::GetIndex()
mol::ResidueView GetResidue ( int  row  )  const

get residue at row

See also:
AlignmentHandle::GetResidue()
int GetResidueIndex ( int  row  )  const

get residue index at row

See also:
AlignmentHandle::GetResidueIndex()
int GetRowCount (  )  const

get number of rows

See also:
AlignmentHandle::GetCount()
char operator[] ( int  row  )  const

The documentation for this class was generated from the following file:
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Generated on 10 Nov 2016 for OpenStructure by  doxygen 1.6.1