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processor.hh File Reference
#include <ost/mol/entity_handle.hh>
#include "module_config.hh"
#include "diag.hh"
#include "compound.hh"

Go to the source code of this file.

Data Structures

class  Processor

Namespaces

namespace  ost
namespace  ost::conop

Typedefs

typedef boost::shared_ptr
< Processor > 
ProcessorPtr

Enumerations

enum  Dialect { PDB_DIALECT, CHARMM_DIALECT }
enum  ConopAction {
  CONOP_WARN = 0, CONOP_SILENT, CONOP_REMOVE, CONOP_REMOVE_ATOM,
  CONOP_REMOVE_RESIDUE, CONOP_FATAL
}

Functions

ConopAction DLLIMPORT ConopActionFromString (const String &name)
String DLLIMPORT StringFromConopAction (ConopAction action)
String DLLIMPORT GuessAtomElement (const String &atom_name, bool hetatm, int atom_count)
mol::ChemClass DLLIMPORT GuessChemClass (mol::ResidueHandle res)
void DLLIMPORT AssignBackboneTorsions (mol::ChainHandle chain)
void DLLIMPORT AssignBackboneTorsions (mol::ResidueHandleList residues)
void DLLIMPORT AssignBackboneTorsions (mol::ResidueHandle prev, mol::ResidueHandle res, mol::ResidueHandle next)
bool DLLIMPORT IsBondFeasible (const mol::AtomHandle &, const mol::AtomHandle &)
mol::AtomHandleList DLLIMPORT GetUnknownAtomsOfResidue (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens=false)