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save.hh
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1 //------------------------------------------------------------------------------
2 // This file is part of the OpenStructure project <www.openstructure.org>
3 //
4 // Copyright (C) 2008-2011 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
7 // the terms of the GNU Lesser General Public License as published by the Free
8 // Software Foundation; either version 3.0 of the License, or (at your option)
9 // any later version.
10 // This library is distributed in the hope that it will be useful, but WITHOUT
11 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
12 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
13 // details.
14 //
15 // You should have received a copy of the GNU Lesser General Public License
16 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
18 //------------------------------------------------------------------------------
19 #ifndef OST_IO_SEQ_SAVE_HH
20 #define OST_IO_SEQ_SAVE_HH
21 
22 /*
23  Author: Marco Biasini
24  */
25 #include <ost/io/module_config.hh>
27 #include <ost/seq/sequence_list.hh>
28 namespace ost { namespace io {
29 
30 void DLLEXPORT_OST_IO SaveSequenceList(const seq::ConstSequenceList& seq_list,
31  const String& filename,
32  const String& format="auto");
33 
35 SequenceListToString(const seq::ConstSequenceList& seq_list,
36  const String& format);
37 
38 void DLLEXPORT_OST_IO
39 SaveSequence(const seq::ConstSequenceHandle& sequence, const String& filename,
40  const String& format="auto");
41 
42 
44 SequenceToString(const seq::ConstSequenceHandle& sequence,
45  const String& format="auto");
46 
47 void DLLEXPORT_OST_IO SaveAlignment(const seq::AlignmentHandle& msa,
48  const String& filename,
49  const String& format="auto");
50 
51 String DLLEXPORT_OST_IO AlignmentToString(const seq::AlignmentHandle& msa,
52  const String& format);
53 
54 }}
55 
56 #endif