Features

General Features

Python Scripting

Program in C++

command line interface for batch processing

graphical user interface (DNG)

License

OpenStructure is released under the
LGPL Version 3 license.

Supported Platforms

Binaries for the following platforms are provided.

Macromolecules

Molecular structures are a central aspect of OpenStructure and a rich understanding of macromolecular structure datasets with access to atoms, residues, chains, bonds and torsions is offered.

Density Maps and 2D Images

Sequences And Alignments

  • Tight integration with molecular structures: Map back and forth between structures and alignments.
  • Calculate conservation scores from alignment .
  • Convenient methods to manipulate alignments: Cutting, shifting, and removing of columns.
  • file formats.

Real-time Rendering

  • Rendering of molecular structures, surfaces, density maps and geometric Objects.
  • Rendering parameters such as colring can be adjusted programmatically and in a convenient user interface.
  • Experimental export to POVray.

Supported File Formats

For a more detailed list of supported file formats, go here.


Molecules

Protein Database PDB

Protein Database mmCIF

PQR

Structure Data File SDF

Sequence Formats

ClustalW

Fasta

Promod (Swiss PDB-Viewer)

Image/Map Formats

TIFF

PNG

MRC/2DX

CCP4

Situs

Spider

JPK

Digital Micrograph

Nanoscope

Features